Quantitatively scoring behavior from video-recorded, long-lasting fish trajectories

Please use this identifier to cite or link to this item: http://hdl.handle.net/10045/77132
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Title: Quantitatively scoring behavior from video-recorded, long-lasting fish trajectories
Authors: Marti-Puig, Pere | Serra-Serra, Moisès | Campos-Candela, Andrea | Reig-Bolano, Ramon | Manjabacas | Palmer, Miquel
Center, Department or Service: Universidad de Alicante. Departamento de Ciencias del Mar y Biología Aplicada
Keywords: Multi-object tracking | Tracking by identification | Long-lasting tracking | Behavioral assays
Knowledge Area: Zoología
Issue Date: Aug-2018
Publisher: Elsevier
Citation: Environmental Modelling & Software. 2018, 106: 68-76. doi:10.1016/j.envsoft.2018.01.007
Abstract: Scoring animal behavior is increasingly needed for better understanding ecological processes. For example, behavior shapes harvesting likelihood, thus management of harvested resources should improve after accounting for behavior-driven processes. Automatic video-recording at controlled arenas is the most widespread method for scoring behavior. However, long term tracking animals while keeping identity is still an opened challenge. Here, we develop an ad-hoc algorithm for multi-tracking objects during days or even weeks, to fulfill the particular needs for a behavioral assay concerning a fish species targeted by recreational fishing. Specifically, we overcome the challenge of keeping fish identity in a context where they often disappeared from the camera when entering a shelter, the pixel size was low compared to the size of the arena and the lighting was constrained by the wellbeing of the fish. This work may contribute to better assess the behavioral features of fish in long-lasting lab conditions.
Sponsor: This work has been partially supported by the Spanish Government projects PHENOFISH with references: CTM2015-69126-C2-1-R and CTM2015-69126-2-R, and is a contribution of the Joint Research Unit IMEDEA-LIMIA. A.C.C. was supported by a FPU predoctoral fellowship (ref.FPU13/01440) from the Spanish Ministry of Education, Culture and Sports (MECD).
URI: http://hdl.handle.net/10045/77132
ISSN: 1364-8152 (Print) | 1873-6726 (Online)
DOI: 10.1016/j.envsoft.2018.01.007
Language: eng
Type: info:eu-repo/semantics/article
Rights: © 2018 Elsevier Ltd.
Peer Review: si
Publisher version: https://doi.org/10.1016/j.envsoft.2018.01.007
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